Stem-loop ccr-mir-27c

Accession

MI0023384

Description

Cyprinus carpio ccr-mir-27c precursor miRNA

Gene family

MIPF0000036; mir-27

Literature search

3 open access papers mention ccr-mir-27c
(18 sentences)

Sequence

uucuuugcugguugugugguguCAGGACUUAACCCACUUGUGAACacugcauugaacuucuuugUUCACAGUGGUUAAGUUCUGCCauccugagacccauaucagcaaa
....((((((((.(((.(((.(((((((((((((.(((.(((((((................)))))))))))))))))........)))))).)))))))))))))).

Structure

uucu        u   u   g      --------       C   U       cugcauu 
    uugcuggu gug ggu uCAGGA        CUUAACC ACU GUGAACa       g
    |||||||| ||| ||| ||||||        ||||||| ||| |||||||        
    aacgacua uac cca aguccu        GAAUUGG UGA CACUUgu       a
---a        -   -   g      aCCGUCUU       -   -       uucuuca 

Annotation confidence Not enough data

Genome context

Unknown

Mature ccr-miR-27c-5p

• Accession: MIMAT0026283
• Description: Cyprinus carpio ccr-miR-27c-5p mature miRNA
• Sequence: 23 - CAGGACUUAACCCACUUGUGAAC - 45
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-27c-3p

• Accession: MIMAT0026284
• Description: Cyprinus carpio ccr-miR-27c-3p mature miRNA
• Sequence: 65 - UUCACAGUGGUUAAGUUCUGCC - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925