miRBase entry: bma-mir-5839

Stem-loop bma-mir-5839


Accession
MI0023434
Description
Brugia malayi bma-mir-5839 precursor miRNA

Literature search
1 open access papers mention bma-mir-5839
(2 sentences)

Sequence

gugauaauuaacugcaaccaaaAGGAGUAAUAUUCUAACGUUGAGCaaaaauauacaaugCUUCGUAGAUUAUUACUCCCAAuggaagcagugagauagcaguau
((........(((((..(((...(((((((((.((((.((..(((((...........))))))))))).)))))))))...)))..)))))......)).....

Structure
-----  gauaauua     aa   aaA         U    A  UU     aaaa 
     gu        acugc  cca   GGAGUAAUA UCUA CG  GAGCa    u
     ||        |||||  |||   ||||||||| |||| ||  |||||    a
     cg        ugacg  ggu   CCUCAUUAU AGAU GC  UUCgu    u
uauga  --auagag     aa   AAC         U    -  --     aaca 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold153: 22289-22393 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from bma-mir-5839
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5839-3p

Accession MIMAT0026337
Description Brugia malayi bma-miR-5839-3p mature miRNA
Sequence 61 - CUUCGUAGAUUAUUACUCCCAA - 82
Evidence not_experimental

Mature bma-miR-5839-5p

Accession MIMAT0037477
Description Brugia malayi bma-miR-5839-5p mature miRNA
Sequence 23 - AGGAGUAAUAUUCUAACGUUGAGC - 46
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498