miRBase entry: bma-mir-5840

Stem-loop bma-mir-5840


Accession
MI0023435
Description
Brugia malayi bma-mir-5840 precursor miRNA


Sequence

aauacuaugaauugcuacgauaaaggauaguaauccacaguugcgcuugaaauuuaugaaaugcACACUGGGACUACUAUUCUCUUuaguagcaauaucaauuauugc
.......(((((((((((.....(((((((((.(((.((((((((.((.(......).)).)))).))))))).))))))))).....)))))))).)))........

Structure
-aauacua   -        gauaa         a   a    -    c  g aa 
        uga auugcuac     aggauagua ucc cagu ugcg uu a  u
        ||| ||||||||     ||||||||| ||| |||| |||| || |   
        acu uaacgaug     UCUUAUCAU AGG GUCA Acgu aa u  u
cguuauua   a        auUUC         C   -    C    a  g au 


Annotation confidence Not enough data
Do you think this miRNA is real?
Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold153: 6986-7093 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from bma-mir-5840
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5840

Accession MIMAT0026338
Description Brugia malayi bma-miR-5840 mature miRNA
Sequence 65 - ACACUGGGACUACUAUUCUCUU - 86
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498