miRBase entry: bma-mir-5841

Stem-loop bma-mir-5841


Accession
MI0023437
Description
Brugia malayi bma-mir-5841 precursor miRNA


Sequence

uaccuacgugaaguauucugaaugcuguaauuguuuuauuuaaauuaugggaguaAUGGCCUGGAUUUUGUCCAAAGCguuguaauacagcUUUGGCACCAUUCAGACCACUAcaccuaauuucaccuuuauacc
.......((((((((((...))))))((((((..........))))))(((.(((.(((.((((((..((.(((((((((......)).)))))))))..)))))).))).))).)))....)))).........

Structure
--uaccuac    aguauucugaaugcuguaauuguuuuauuuaaauuau   a   A   C      UU  U       -  ug 
         guga                                     ggg gua UGG CUGGAU  UG CCAAAGC gu  u
         ||||                                     ||| ||| ||| ||||||  || ||||||| ||   
         cacu                                     ucc cAU ACC GACUUA  AC GGUUUcg ca  a
ccauauuuc    ---------------------------------uuaa   a   C   A      CC  -       a  ua 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold435: 2745-2879 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from bma-mir-5841
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5841-5p

Accession MIMAT0026339
Description Brugia malayi bma-miR-5841-5p mature miRNA
Sequence 56 - AUGGCCUGGAUUUUGUCCAAAGC - 78
Evidence not_experimental

Mature bma-miR-5841-3p

Accession MIMAT0037478
Description Brugia malayi bma-miR-5841-3p mature miRNA
Sequence 92 - UUUGGCACCAUUCAGACCACUA - 113
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498