miRBase entry: bma-mir-2i

Stem-loop bma-mir-2i


Accession
MI0023448
Description
Brugia malayi bma-mir-2i precursor miRNA

Literature search
3 open access papers mention bma-mir-2i
(34 sentences)

Sequence

aaaaauuagcaucgguaacggucGCUGCAUCGUCUGAGUUAUGCgguuguuucuuguuuugcaUAUCGCAGAAUCGAUGCAGCAUacugugcugugugcuuauaucacau
.......((((((((((.((((.(((((((((((((.(.(((((((............))))))).).))))..)))))))))..))))))))).)))))..........

Structure
---aaaaauu     -     a    -c         --    A U       uuguu 
          agcau cggua cggu  GCUGCAUCG  UCUG G UAUGCgg     u
          ||||| ||||| ||||  |||||||||  |||| | |||||||      
          ucgug gucgu guca  CGACGUAGC  AGAC C AUacguu     c
uacacuauau     u     -    UA         UA    G U       uuguu 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold153: 16336-16445 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from bma-mir-2i
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-2i-5p

Accession MIMAT0026348
Description Brugia malayi bma-miR-2i-5p mature miRNA
Sequence 24 - GCUGCAUCGUCUGAGUUAUGC - 44
Evidence experimental
Illumina [2]

Mature bma-miR-2i-3p

Accession MIMAT0037480
Description Brugia malayi bma-miR-2i-3p mature miRNA
Sequence 64 - UAUCGCAGAAUCGAUGCAGCAU - 85
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498