miRBase entry: bma-mir-5858

Stem-loop bma-mir-5858


Accession
MI0023457
Description
Brugia malayi bma-mir-5858 precursor miRNA


Sequence

cugcgaacagAAAAUCGCUUUGGAUUAGGAAGUUgguagacaaaagUUCCUAAGCUAAAUCGAUUUUCUguugcaa
.(((.((((((((((((.(((((.(((((((.((.........)).))))))).))))).))))))))))))))).

Structure
c   g            C     A       G  ggu 
 ugc aacagAAAAUCG UUUGG UUAGGAA UU   a
 ||| |||||||||||| ||||| ||||||| ||   g
 acg uugUCUUUUAGC AAAUC AAUCCUU aa   a
a   -            U     G       g  aac 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold5: 2094851-2094926 [+]

Database links

Mature bma-miR-5858-5p

Accession MIMAT0026357
Description Brugia malayi bma-miR-5858-5p mature miRNA
Sequence 11 - AAAAUCGCUUUGGAUUAGGAAGUU - 34
Evidence not_experimental

Mature bma-miR-5858-3p

Accession MIMAT0037481
Description Brugia malayi bma-miR-5858-3p mature miRNA
Sequence 47 - UUCCUAAGCUAAAUCGAUUUUCU - 69
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498