miRBase entry: bma-mir-5880b

Stem-loop bma-mir-5880b


Accession
MI0023492
Description
Brugia malayi bma-mir-5880b precursor miRNA
Gene family
MIPF0001483; mir-5880


Sequence

uguccaaguuugaccuaacaaguuaccgauguaacaguuuuugcacacGUCGGUAAUUUGUUAGAUCAAACuuggacaucu
(((((((((((((.((((((((((((((((((....((....))..)))))))))))))))))).)))))))))))))...

Structure
---             c                  aaca  u 
   uguccaaguuuga cuaacaaguuaccgaugu    gu u
   ||||||||||||| ||||||||||||||||||    ||  
   acagguuCAAACU GAUUGUUUAAUGGCUGca    cg u
ucu             A                  --ca  u 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold24: 278000-278080 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-5880b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5880b

Accession MIMAT0026381
Description Brugia malayi bma-miR-5880b mature miRNA
Sequence 49 - GUCGGUAAUUUGUUAGAUCAAAC - 71
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4