Stem-loop sbi-MIR5568g

Accession

MI0023506

Description

Sorghum bicolor sbi-MIR5568g precursor miRNA

Gene family

MIPF0000344; MIR818

Literature search

2 open access papers mention sbi-MIR5568g
(3 sentences)

Sequence

uaaauauuugauauguacucccuucauucCAAAUUAUAAGAUGUUUUGGCuuuuuuagauacauugcuguuauuauguaucaagacagcguauaucuaagugcauagcaauagcuaugugucuagauaagacAAAACGUCUUAUAAUUUGGAGcggaaggaguaugaagcuguauauuug
(((((((.......(((((((.(((.((((((((((((((((((((((.(((.(((((((((((.((((((.((((((((..(((.........)))..)))))))).)))))).))))))))))).))).)))))))))))))))))))))).))).)))))))........)))))))

Structure

       -uugauau       c   a                      G   u           u      a        ca   cag 
uaaauau        guacucc uuc uucCAAAUUAUAAGAUGUUUUG Cuu uuuagauacau gcuguu uuauguau  aga   c
|||||||        ||||||| ||| |||||||||||||||||||||| ||| ||||||||||| |||||| ||||||||  |||   g
guuuaua        uaugagg agg GAGGUUUAAUAUUCUGCAAAAc gaa agaucugugua cgauaa gauacgug  ucu   u
       ugucgaag       a   c                      a   u           u      c        aa   aua 

Annotation confidence Not enough data

Genome context

chr3: 55813821-55814000 [+]

Mature sbi-miR5568g-5p

• Accession: MIMAT0026465
• Description: Sorghum bicolor sbi-miR5568g-5p mature miRNA
• Sequence: 30 - CAAAUUAUAAGAUGUUUUGGC - 50
• Evidence: not_experimental

Mature sbi-miR5568g-3p

• Accession: MIMAT0026466
• Description: Sorghum bicolor sbi-miR5568g-3p mature miRNA
• Sequence: 133 - AAAACGUCUUAUAAUUUGGAG - 153
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290