miRBase entry: sbi-MIR5564c

Stem-loop sbi-MIR5564c


Accession
MI0023507
Description
Sorghum bicolor sbi-MIR5564c precursor miRNA


Sequence

gguuccggagcuggccuguccugggaagcAAUUCGUCGAACAGCUGCAGCgcgagacggugguaggcccucagccucgaccacgcgcACGCGAGCUGUUUGGCGAAUUgcuuuacccaugucaggcccugccucgguuauauuauacggccuucaacc
((((((((.((.((((((.(.((((((((((((((((((((((((((.(((((....(((.(.((((.....))))).))).)))))..)).))))))))))))))))))))..)))).).))))))..)).))))...........)))).......

Structure
-------    -----------    a  -u      u c    --                    -  -A     agac   g u    c 
       gguu           ccgg gc  ggccug c uggg  aagcAAUUCGUCGAACAGCU GC  GCgcg    ggu g aggc c
       ||||           |||| ||  |||||| | ||||  |||||||||||||||||||| ||  |||||    ||| | |||| u
       ccgg           ggcu cg  ccggac g accc  uucgUUAAGCGGUUUGUCGA CG  cgcgc    cca c uccg c
ccaacuu    cauauuauauu    c  uc      u u    au                    G  CA     ---a   g -    a 


Annotation confidence Not enough data
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Genome context
chr5: 69704231-69704388 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from sbi-MIR5564c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR5564c-5p

Accession MIMAT0026390
Description Sorghum bicolor sbi-miR5564c-5p mature miRNA
Sequence 30 - AAUUCGUCGAACAGCUGCAGC - 50
Evidence not_experimental

Mature sbi-miR5564c-3p

Accession MIMAT0026391
Description Sorghum bicolor sbi-miR5564c-3p mature miRNA
Sequence 88 - ACGCGAGCUGUUUGGCGAAUU - 108
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290