Stem-loop sbi-MIR6217a

Accession

MI0023508

Description

Sorghum bicolor sbi-MIR6217a precursor miRNA

Gene family

MIPF0001550; MIR6217

Sequence

guagcuggcuacaaaauauguuauucugUAGCCACUUUGAGUUACGAUAAUUacuauauuaauuuacaagauuauauuaacuccuuacuaagugguuuacuauaacauuacgguaaauauccucauguguuauaguaacccaacuaucguaaauacauauacauauuaucguaaauuaguauauAAAAUUAUCGUAAAUAGAGGUGGCuauagaauaacauauuuuguagcuagcuac
((((((((((((((((((((((((((((((((((((((...(((((((((((..(((((((((((((..(((.((((.......((((..(((((.((((((((((((...((.......))....)))))))))))).)).)))...))))..........)))).))))))))))))))))...)))))))))))...))))))))))))))))))))))))))))))))))))))

Structure

                                      GAG           -ac             aa   u    ---uaacucc    -ua   -  u            -uac  ua 
guagcuggcuacaaaauauguuauucugUAGCCACUUU   UUACGAUAAUU   uauauuaauuuac  gau auau          uuac   agu gg uuacuauaacau    gg  a
||||||||||||||||||||||||||||||||||||||   |||||||||||   |||||||||||||  ||| ||||          ||||   ||| || ||||||||||||    ||  a
caucgaucgauguuuuauacaauaagauauCGGUGGAG   AAUGCUAUUAA   auaugauuaaaug  cua uaua          aaug   uca cc aaugauauugug    cc  u
                                      AUA           AAu             --   u    cauauacaua    cua   a  c            uacu  ua 

Annotation confidence Not enough data

Genome context

chr4: 295343-295580 [+]

Mature sbi-miR6217a-5p

• Accession: MIMAT0026392
• Description: Sorghum bicolor sbi-miR6217a-5p mature miRNA
• Sequence: 29 - UAGCCACUUUGAGUUACGAUAAUU - 52
• Evidence: not_experimental

Mature sbi-miR6217a-3p

• Accession: MIMAT0026393
• Description: Sorghum bicolor sbi-miR6217a-3p mature miRNA
• Sequence: 185 - AAAAUUAUCGUAAAUAGAGGUGGC - 208
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290