Stem-loop sbi-MIR6217b

Accession

MI0023509

Description

Sorghum bicolor sbi-MIR6217b precursor miRNA

Gene family

MIPF0001550; MIR6217

Sequence

uagcuacaaaauaacuuauuuugUAGCCACUUUGAGUUACGAUAAUUauuauauuaauuuauaagauuauaguaacucuuuacuaagugguuuacuauaacauuaugguaaauauccucauguguuauaguaucaaacuaucguaaauauguauacauauuaucguaaauuaguauauAAAAUUAUCGUAAAUAGAGGUGGCuacagaauaaauuauuuuguaguua
((((((((((((((.((((((((((((((((((...(((((((((((..(((((((((((((..(((.((((((((..(((((...(((((((((((((((((...((.......))....)))))))))))...)))))).)))))...)).))).))).))))))))))))))))...)))))))))))...)))))))))))))))))).))))))))))))))

Structure

              c                  GAG           -au             aa   u   -   -  -uc     uaa      ---           -uau  ua 
uagcuacaaaauaa uuauuuugUAGCCACUUU   UUACGAUAAUU   uauauuaauuuau  gau aua gua ac   uuuac   gugguu   uacuauaacau    gg  a
|||||||||||||| ||||||||||||||||||   |||||||||||   |||||||||||||  ||| ||| ||| ||   |||||   ||||||   |||||||||||    ||  a
auugauguuuuauu aauaagacauCGGUGGAG   AAUGCUAUUAA   auaugauuaaaug  cua uau cau ug   aaaug   uaucaa   augauauugug    cc  u
              a                  AUA           AAu             --   u   a   a  uau     --c      acu           uacu  ua 

Annotation confidence Not enough data

Genome context

chr5: 10851898-10852124 [+]

Mature sbi-miR6217b-5p

• Accession: MIMAT0026394
• Description: Sorghum bicolor sbi-miR6217b-5p mature miRNA
• Sequence: 24 - UAGCCACUUUGAGUUACGAUAAUU - 47
• Evidence: not_experimental

Mature sbi-miR6217b-3p

• Accession: MIMAT0026395
• Description: Sorghum bicolor sbi-miR6217b-3p mature miRNA
• Sequence: 179 - AAAAUUAUCGUAAAUAGAGGUGGC - 202
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290