miRBase entry: sbi-MIR6218

Stem-loop sbi-MIR6218


Accession
MI0023510
Description
Sorghum bicolor sbi-MIR6218 precursor miRNA


Sequence

guauuuauaaauuauaaaaaauccaaacgacgucCGAAAAUCACGAAACUUGUCGaugugucuugguaucccauguggagacuaugauaaaaauuuuaggaaguuucgagcaaguagugauguccgauacuuaaaacccagacaucuccacuugucaaaguuuugugaucacauguggaggaggauggcuuuuaagcauucgaagucacuacaugaaacuuccucaaauuuuuaucauagucuccacaugggauaccaagacacaucgACAAGUUUCGUGAUUUUUGGAcgucguucggauuuuuuauaauuuaaauac
(((((((..(((((((((((((((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.(((((((((((.....((((((((.((.(((.(((((((.(((..(.(((((((.((((((....))).....))).))))))).)..))).))))))).))).)).)))))))).))))))))))).))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).))))))))))))))))))))))

Structure
       ua               a                                                                       u           agcaa        g  c   a       c   ga a       u   -----   a 
guauuua  aauuauaaaaaaucc aacgacgucCGAAAAUCACGAAACUUGUCGaugugucuugguaucccauguggagacuaugauaaaaauuu aggaaguuucg     guagugau uc gau cuuaaaa cca  c ucuccac ugu     caa g
|||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||     |||||||| || ||| ||||||| |||  | ||||||| |||     |||  
cauaaau  uuaauauuuuuuagg uugcugcAGGUUUUUAGUGCUUUGAACAgcuacacagaaccauaggguacaccucugauacuauuuuuaaa uccuucaaagu     caucacug ag uua gaauuuu ggu  g ggaggug aca     guu u
       --               c                                                                       c           ----a        a  c   c       c   ag a       u   cuagu   u 


Annotation confidence Not enough data
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Genome context
chr10: 6542524-6542842 [+]

Database links

Mature sbi-miR6218-5p

Accession MIMAT0026396
Description Sorghum bicolor sbi-miR6218-5p mature miRNA
Sequence 35 - CGAAAAUCACGAAACUUGUCG - 55
Evidence not_experimental

Mature sbi-miR6218-3p

Accession MIMAT0026397
Description Sorghum bicolor sbi-miR6218-3p mature miRNA
Sequence 269 - ACAAGUUUCGUGAUUUUUGGA - 289
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290