Stem-loop sbi-MIR5568c

Accession

MI0023513

Description

Sorghum bicolor sbi-MIR5568c precursor miRNA

Gene family

MIPF0001377; MIR5568

Literature search

2 open access papers mention sbi-MIR5568c
(3 sentences)

Sequence

guacuccaUCUGUUCCAAAUUGUAAGUCGuuuuggcuuucuuaaauacauaguuuuuacuaugcauauagacacagugcauauguuuuuuugcauagcaaaagcuauguacccaggaaagccaaaacaACUUACAGUUUGGAACGGAGGgaguac
(((((((.(((((((((((((((((((.((((((((((((((...((((((((((((.(((((((...(((((.........)))))...))))))).))))))))))))...)))))))))))))).))))))))))))))))))).)))))))

Structure

       a                   C              aaa            a       uau     cag 
guacucc UCUGUUCCAAAUUGUAAGU Guuuuggcuuucuu   uacauaguuuuu cuaugca   agaca   u
||||||| ||||||||||||||||||| ||||||||||||||   |||||||||||| |||||||   |||||   g
caugagG AGGCAAGGUUUGACAUUCA caaaaccgaaagga   auguaucgaaaa gauacgu   uuugu   c
       G                   a              ccc            c       uuu     aua 

Annotation confidence Not enough data

Genome context

chr1: 20734250-20734404 [-]

Mature sbi-miR5568c-5p

• Accession: MIMAT0026400
• Description: Sorghum bicolor sbi-miR5568c-5p mature miRNA
• Sequence: 9 - UCUGUUCCAAAUUGUAAGUCG - 29
• Evidence: not_experimental

Mature sbi-miR5568c-3p

• Accession: MIMAT0026401
• Description: Sorghum bicolor sbi-miR5568c-3p mature miRNA
• Sequence: 129 - ACUUACAGUUUGGAACGGAGG - 149
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290