Stem-loop sbi-MIR6219

Accession

MI0023514

Description

Sorghum bicolor sbi-MIR6219 precursor miRNA

Sequence

uacugcggaagagggucauauaaccgggaguaaaggcccccuuuagucccgggugugcGAACCGGGACUAAAGGUGGGACAUuAGUCCCGAAACCUUAGUCCCGGCUcacaguccgggacuagagguggauuucguccgggacuaaaggccgguguuguagcagug
((((((..((.(.((((......((.(((..(((..((.((((((((((((((((((.(..((((((((((.((((((((....)))))...)))))))))))))).)))).)))))))))))))).)).)))..))).))......))))..).))...))))))

Structure

      -gg  g -g    auauaa  g   gu   gg  c              -    c AA          A   ---     A 
uacugc   aa a  gguc      cc gga  aaa  cc ccuuuagucccggg ugug G  CCGGGACUAA GGU   GGGAC U
||||||   || |  ||||      || |||  |||  || |||||||||||||| |||| |  |||||||||| |||   |||||  
gugacg   uu u  ccgg      gg ccu  uuu  gg ggagaucagggccu acac C  GGCCCUGAUU CCA   CCCUG u
      aug  g gg    aaauca  g   gc   -a  u              g    U --          -   AAG     A 

Annotation confidence Not enough data

Genome context

chr5: 6546345-6546510 [+]

Mature sbi-miR6219-5p

• Accession: MIMAT0026402
• Description: Sorghum bicolor sbi-miR6219-5p mature miRNA
• Sequence: 59 - GAACCGGGACUAAAGGUGGGACAU - 82
• Evidence: not_experimental

Mature sbi-miR6219-3p

• Accession: MIMAT0026403
• Description: Sorghum bicolor sbi-miR6219-3p mature miRNA
• Sequence: 84 - AGUCCCGAAACCUUAGUCCCGGCU - 107
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290