miRBase entry: sbi-MIR6224a

Stem-loop sbi-MIR6224a


Accession
MI0023520
Description
Sorghum bicolor sbi-MIR6224a precursor miRNA
Gene family
MIPF0001435; MIR6224


Sequence

acuccCUCCGUCCUAAUAUAUAAGGCguaaccacuuuuuaaucauguccuauaauacaaagcgugcccucucacagacauuaaugcaguaguacuagugcugagagagaaaauuaaaugcguucuuggucuuugaaccagaggugguuaugcCUUAUAUACUAGGACGGAGGGagu
(((((((((((((((.((((((((((((((((((((((...(((.(.((...(((.((.........(((((.(((.(((((.(((....))).)))))))).))))).........)).)))...)).)..)))...)))))))))))))))))))))).)))))))))))))))

Structure
               A                      uaa   -u u  uau   a  aagcgugcc     a   a     a   a 
acuccCUCCGUCCUA UAUAUAAGGCguaaccacuuuu   uca  g cc   aau ca         cucuc cag cauua ugc g
||||||||||||||| ||||||||||||||||||||||   |||  | ||   ||| ||         ||||| ||| ||||| |||  
ugaGGGAGGCAGGAU AUAUAUUCcguauugguggaga   agu  c gg   uug gu         gagag guc gugau aug u
               C                      cca   uu u  uuc   c  aaauuaaaa     a   -     c   a 


Annotation confidence Not enough data
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Genome context
chr1: 30488899-30489074 [-]

Database links

Mature sbi-miR6224a-5p

Accession MIMAT0026414
Description Sorghum bicolor sbi-miR6224a-5p mature miRNA
Sequence 6 - CUCCGUCCUAAUAUAUAAGGC - 26
Evidence not_experimental

Mature sbi-miR6224a-3p

Accession MIMAT0026415
Description Sorghum bicolor sbi-miR6224a-3p mature miRNA
Sequence 153 - CUUAUAUACUAGGACGGAGGG - 173
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290