Stem-loop sbi-MIR6226

Accession

MI0023525

Description

Sorghum bicolor sbi-MIR6226 precursor miRNA

Sequence

uccuuagccacccauauuuucAGAUCGGACGACUAAUCGCGAUUAauugugauuagucauccuuaucguaacugcgugcuugauauguuucgucgauucgaucaggucgaucagaaaccuuaucguccGAUUAGUCACGAUUAGUCGUCCGAuaaguguagcagga
((((..(((((............((((((((((((((((.(((((((((.(((.............(((....))).....((((.((((((((((((......)))))))..)))))..)))))))))))))))).))))))))))))))))..)))..))))))

Structure

    ua  --   ccauauuuucAG                C         u   uagucauccuuaucguaacugcgugcuu    -u     --       cg 
uccu  gc  cac            AUCGGACGACUAAUCG GAUUAauug gau                            gaua  guuuc  gucgauu  a
||||  ||  |||            |||||||||||||||| ||||||||| |||                            ||||  |||||  |||||||   
agga  cg  gug            uAGCCUGCUGAUUAGC CUGAUUAGc cug                            cuau  caaag  uagcugg  u
    --  au   ----------aa                A         -   ----------------------------    uc     ac       ac 

Annotation confidence Not enough data

Genome context

chr10: 40284608-40284773 [+]

Mature sbi-miR6226-5p

• Accession: MIMAT0026424
• Description: Sorghum bicolor sbi-miR6226-5p mature miRNA
• Sequence: 22 - AGAUCGGACGACUAAUCGCGAUUA - 45
• Evidence: not_experimental

Mature sbi-miR6226-3p

• Accession: MIMAT0026425
• Description: Sorghum bicolor sbi-miR6226-3p mature miRNA
• Sequence: 129 - GAUUAGUCACGAUUAGUCGUCCGA - 152
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290