miRBase entry: sbi-MIR2118

Stem-loop sbi-MIR2118


Accession
MI0023526
Description
Sorghum bicolor sbi-MIR2118 precursor miRNA
Gene family
MIPF0000745; MIR2118

Literature search
2 open access papers mention sbi-MIR2118
(3 sentences)

Sequence

gugggcauggaagaggaagaaaagagggucuaagagcagugGGCAUGGGAACAUGUAGGAAGGccuuugagauggaaagcucauuuugggucUUCCUGAUGCCUCCCAUGCCUAuuguucuuaggugcuccuuccucuugcuuuuggcucac
((((((..(.(((((((((....(((.(((((((((((((((((((((((.(((.(((((((((((..(((((((.....)))))))))))))))))))))..))))))))))))))))))))))).)))))))))))).).....))))))

Structure
      ---au g         aaaa   g                       -A   G           uu       a 
gugggc     g aagaggaag    gag gucuaagagcagugGGCAUGGGA  CAU UAGGAAGGccu  gagaugg a
||||||     | |||||||||    ||| |||||||||||||||||||||||  ||| |||||||||||  ||||||| a
cacucg     c uucuccuuc    cuc uggauucuuguuAUCCGUACCCU  GUA GUCCUUcuggg  uuuuacu g
      guuuu g         ----   g                       CC   -           --       c 


Annotation confidence Not enough data
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Genome context
chr6: 45483175-45483326 [-]

Database links

Mature sbi-miR2118-5p

Accession MIMAT0026426
Description Sorghum bicolor sbi-miR2118-5p mature miRNA
Sequence 42 - GGCAUGGGAACAUGUAGGAAGG - 63
Evidence not_experimental

Mature sbi-miR2118-3p

Accession MIMAT0026427
Description Sorghum bicolor sbi-miR2118-3p mature miRNA
Sequence 93 - UUCCUGAUGCCUCCCAUGCCUA - 114
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290