Stem-loop sbi-MIR6227

Accession

MI0023527

Description

Sorghum bicolor sbi-MIR6227 precursor miRNA

Sequence

cuggacauggauguauagguaguaguGGGCCCAAAUAGCAAGUGUUGUGAgaaggaguaaaaaagagaagauauuuuagagacaaguaugaaacaacuuauugaauaacuuggcuuuuaucacgugacuuauagccaagcacuuggcucuauuagagcaagaucaauaauagagccaaguguuuggcuauaaguuaagugauuagagccaaguuauacaauaaguugucucauacuugucucuaaaauaucuucuauuucuuauuccuuCUCACAACACUUGCUAUUUGGGcccacuacuacuuauggauccgugcucag
((((.(((((((.(((((((((((((((((((((((((((((((((((((((((((((((.(((.((((((((((((((((((((((((((.(((((((((((.(((((((((((((.(((((.((((((((((((((((((((((((((((((((......))..)))))))))))))))))))))))))))))).))))).))))))))))))).))))))))))).)))))))))))))))))))))))))).))).))))))))))))))))))))))))))))))))))))))))))))))).))))))).))))

Structure

    a       g                                               a   g                          a           a             u     g                              --  gc 
cugg cauggau uauagguaguaguGGGCCCAAAUAGCAAGUGUUGUGAgaaggaguaa aaa agaagauauuuuagagacaaguauga acaacuuauug auaacuuggcuuu aucac ugacuuauagccaagcacuuggcucuauua  ga  a
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||  ||   
gacu gugccua guauucaucaucacccGGGUUUAUCGUUCACAACACUCuuccuuauu uuu ucuucuauaaaaucucuguucauacu uguugaauaac uauugaaccgaga uagug auugaauaucgguuugugaaccgagauaau  cu  a
    c       g                                               c   a                          c           a             u     a                              aa  ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature sbi-miR6227-5p

• Accession: MIMAT0026428
• Description: Sorghum bicolor sbi-miR6227-5p mature miRNA
• Sequence: 27 - GGGCCCAAAUAGCAAGUGUUGUGA - 50
• Evidence: not_experimental

Mature sbi-miR6227-3p

• Accession: MIMAT0026429
• Description: Sorghum bicolor sbi-miR6227-3p mature miRNA
• Sequence: 270 - CUCACAACACUUGCUAUUUGGG - 291
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290