Stem-loop sbi-MIR6231

Accession

MI0023533

Description

Sorghum bicolor sbi-MIR6231 precursor miRNA

Sequence

gacucaugagcaaggauacaaguggguuuuGUCCGUGAGUCCACAAAUAGGccauuuuccccuggggucuguggucuguagaaccgcguaaaaauaaccUAUUUGUGGACUCAUGGACAUgcccuuuugguacuaagucauaaguggguc
(((((((..((..((...((((.((((..((((((((((((((((((((((..((((((((...)))..((((((.......))))))..)))))..)))))))))))))))))))))).)))).))))...))..)).....)))))))

Structure

       ---ga  aa  aua    u    uu                      cc     ccccugggguc      cu 
gacucau     gc  gg   caag gggu  uGUCCGUGAGUCCACAAAUAGG  auuuu           uguggu  g
|||||||     ||  ||   |||| ||||  ||||||||||||||||||||||  |||||           ||||||  u
cugggug     ug  uc   guuu cccg  ACAGGUACUCAGGUGUUUAUcc  uaaaa           gcgcca  a
       aauac  aa  aug    u    -U                      aa     ---------au      ag 

Annotation confidence Not enough data

Genome context

chr2: 46662910-46663059 [+]

Mature sbi-miR6231-5p

• Accession: MIMAT0026440
• Description: Sorghum bicolor sbi-miR6231-5p mature miRNA
• Sequence: 31 - GUCCGUGAGUCCACAAAUAGG - 51
• Evidence: not_experimental

Mature sbi-miR6231-3p

• Accession: MIMAT0026441
• Description: Sorghum bicolor sbi-miR6231-3p mature miRNA
• Sequence: 100 - UAUUUGUGGACUCAUGGACAU - 120
• Evidence: not_experimental

References

1. PubMed ID: 22747909
   Computational identification and analysis of novel sugarcane microRNAs
   Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
   BMC Genomics (2012) 13:290