miRBase entry: sbi-MIR6234b

Stem-loop sbi-MIR6234b


Accession
MI0023539
Description
Sorghum bicolor sbi-MIR6234b precursor miRNA
Gene family
MIPF0001642; MIR6234


Sequence

ucuucucucuccacuacucucgccuacucuuuuccguaugcAAGUGUGUUCCUCUAUUUGACGCUaaaggugggugcccccauugaaacacuucacaaauguugcuguugcauuugguaguauucguaccuUUAGCGUCAAGAGACGAACACACUugcccaucgaaaacgacaagguguguaguguuggaacaagaaga
((((((...((((.(((((.(((((..(((((((.((..((((((((((((.(((.(((((((((((((((((((((..(((.((.(((((..((....))..).)))).))..)))..))))))..)))))))))))))))))).))))))))))))..)).))))).))..))))).).)))).))))...))))))

Structure
      cuc    c    - u     ac  -     c  au            C   A               --      cc   -u  a    - uu  c 
ucuucu   ucca uacu c cgccu  uc uuuuc gu  gcAAGUGUGUUC UCU UUUGACGCUaaaggu  gggugc  cca  ug aaca c  ca a
||||||   |||| |||| | |||||  || ||||| ||  |||||||||||| ||| |||||||||||||||  ||||||  |||  || |||| |  ||  
agaaga   aggu guga g gugga  ag aaaag ua  cguUCACACAAG AGA GAACUGCGAUUucca  cuuaug  ggu  ac uugu g  gu a
      aca    u    u u     ac  c     c  cc            C   -               ug      au   uu  g    c uu  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr9: 47322610-47322808 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from sbi-MIR6234b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sbi-miR6234b-5p

Accession MIMAT0026452
Description Sorghum bicolor sbi-miR6234b-5p mature miRNA
Sequence 42 - AAGUGUGUUCCUCUAUUUGACGCU - 65
Evidence not_experimental

Mature sbi-miR6234b-3p

Accession MIMAT0026453
Description Sorghum bicolor sbi-miR6234b-3p mature miRNA
Sequence 132 - UUAGCGUCAAGAGACGAACACACU - 155
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290