miRBase entry: bfl-mir-4900b-2

Stem-loop bfl-mir-4900b-2


Accession
MI0023545
Description
Branchiostoma floridae bfl-mir-4900b-2 precursor miRNA
Gene family
MIPF0001224; mir-4900


Sequence

auggccucaguuagggcuguucuucgcuggaguagcucugugacuaugggaccaUAGCUGCCUGGCGAAGAAUGGucccuugaggugcu
...(((((((...(((((((((((((((((.((((((.((.(.((...)).))).))))))))))))))))))))))).)))))))...

Structure
aug       uua                 a      c  u a  a 
   gccucag   gggcuguucuucgcugg guagcu ug g cu  
   |||||||   ||||||||||||||||| |||||| || | || u
   uggaguu   ccuGGUAAGAAGCGGUC CGUCGA ac c gg  
ucg       --c                 -      U  - a  g 


Annotation confidence Not enough data
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Genome context
GG666468.1: 2419298-2419386 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from bfl-mir-4900b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bfl-miR-4900b

Accession MIMAT0020493
Description Branchiostoma floridae bfl-miR-4900b mature miRNA
Sequence 55 - UAGCUGCCUGGCGAAGAAUGG - 75
Evidence experimental
454 [1]

References

  1. PubMed ID: 21210939
    microRNA complements in deuterostomes: origin and evolution of microRNAs
    "Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M"
    "Evol Dev (2011) 13:15-27