miRBase entry: cqu-mir-317-2

Stem-loop cqu-mir-317-2


Accession
MI0023548
Description
Culex quinquefasciatus cqu-mir-317-2 precursor miRNA
Gene family
MIPF0000144; mir-317

Literature search
1 open access papers mention cqu-mir-317-2
(5 sentences)

Sequence

gaggaauuucggcuacCGGGAUACACCCUGUGCUCGCUUUGCauucgaaacuagUGAACACAGCUGGUGGUAUCUcaguggcccugauccga
..(((.((..((((((.(((((((((((((((.(((((..............))))).)))))..))).))))))).))))))..)))))..

Structure
ga   a  uc      C       -   --     C     UUGCau 
  gga uu  ggcuac GGGAUAC ACC  CUGUG UCGCU      u
  ||| ||  |||||| ||||||| |||  ||||| |||||       
  ccu ag  ccggug cUCUAUG UGG  GACAC AGUga      c
ag   -  uc      a       G   UC     A     ucaaag 


Annotation confidence Not enough data
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Genome context
supercont3.36: 1134821-1134912 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cqu-mir-317-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cqu-miR-317-5p

Accession MIMAT0014384
Description Culex quinquefasciatus cqu-miR-317-5p mature miRNA
Sequence 17 - CGGGAUACACCCUGUGCUCGCUUUGC - 42
Evidence experimental
Illumina [1]

Mature cqu-miR-317-3p

Accession MIMAT0014385
Description Culex quinquefasciatus cqu-miR-317-3p mature miRNA
Sequence 55 - UGAACACAGCUGGUGGUAUCU - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119