miRBase entry: hcmv-mir-US29

Stem-loop hcmv-mir-US29


Accession
MI0023579
Description
Human cytomegalovirus hcmv-mir-US29 precursor miRNA


Sequence

ucacguuUGGAUGUGCUCGGACCGUGACGguggguuucgucgcgCCCACGGUCCGGGCACAAUCAaccgugg
.((((.((((.(((((((((((((((..((((.(......).))))))))))))))))))).)))).)))).

Structure
u    u    A               AC    g uu 
 cacg uUGG UGUGCUCGGACCGUG  Ggug g  u
 |||| |||| |||||||||||||||  |||| |   
 gugc aACU ACACGGGCCUGGCAC  CCgc c  c
g    c    A               --    g ug 


Annotation confidence Not enough data
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Comments
Stark et al. named this sequence mir-US33as in [1].

Genome context
HEHCMVCG: 220469-220540 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from hcmv-mir-US29
Name Accession Chromosome Start End Strand Confidence




Disease association
hcmv-mir-US29 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hcmv-miR-US29-5p

Accession MIMAT0028167
Description Human cytomegalovirus hcmv-miR-US29-5p mature miRNA
Sequence 8 - UGGAUGUGCUCGGACCGUGACG - 29
Evidence experimental
Illumina [1]

Mature hcmv-miR-US29-3p

Accession MIMAT0028168
Description Human cytomegalovirus hcmv-miR-US29-3p mature miRNA
Sequence 45 - CCCACGGUCCGGGCACAAUCA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22013051
    High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection
    "Stark TJ, Arnold JD, Spector DH, Yeo GW"
    "J Virol (2012) 86:226-235