miRBase entry: mdo-mir-449c

Stem-loop mdo-mir-449c


Accession
MI0023812
Description
Monodelphis domestica mdo-mir-449c precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

627 reads, 107 reads per million, 3 experiments
GGGCAGUGUAUUGUUAGUUAGcuguuuuucauaagugcagcAACUGCAUACACUUCCAU
(((.(((((((.((.((((.(((((...........)))))))))))))))))))))..

Structure
--   C       U  U    A     uuuu 
  GGG AGUGUAU GU AGUU Gcugu    c
  ||| ||||||| || |||| |||||    a
  CCU UCACAUA CG UCAA cgacg    u
UA   -       -  -    -     ugaa 


Annotation confidence High
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Genome context
chr3: 17544592-17544650 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-449c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-449c-5p

Accession MIMAT0028580
Description Monodelphis domestica mdo-miR-449c-5p mature miRNA
Sequence 1 - GGGCAGUGUAUUGUUAGUUAG - 21
Evidence experimental
Illumina [1]

Mature mdo-miR-449c-3p

Accession MIMAT0028581
Description Monodelphis domestica mdo-miR-449c-3p mature miRNA
Sequence 42 - AACUGCAUACACUUCCAU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45