miRBase entry: mdo-mir-34b

Stem-loop mdo-mir-34b


Accession
MI0023816
Description
Monodelphis domestica mdo-mir-34b precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

60274 reads, 2309 reads per million, 5 experiments
AGGCAGUGUAGUUAGCUGAUUGUauucuacugccuacAAUCACUAACUCCACUGCCAUC
.(((((((.((((((.((((((((..(....)..)))))))))))))).)))))))...

Structure
--A       U      C        uu u 
   GGCAGUG AGUUAG UGAUUGUa  c a
   ||||||| |||||| ||||||||  |  
   CCGUCAC UCAAUC ACUAAcau  g c
CUA       C      -        cc u 


Annotation confidence High
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Genome context
chr4: 241889198-241889256 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-34b-5p

Accession MIMAT0028588
Description Monodelphis domestica mdo-miR-34b-5p mature miRNA
Sequence 1 - AGGCAGUGUAGUUAGCUGAUUGU - 23
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mdo-miR-34b-3p

Accession MIMAT0028589
Description Monodelphis domestica mdo-miR-34b-3p mature miRNA
Sequence 38 - AAUCACUAACUCCACUGCCAUC - 59
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45