miRBase entry: mdo-mir-1544c-5

Stem-loop mdo-mir-1544c-5


Accession
MI0023921
Description
Monodelphis domestica mdo-mir-1544c-5 precursor miRNA
Gene family
MIPF0001645; mir-1544


Sequence

225114 reads, 3928 reads per million, 5 experiments
UGCACCCAGGGAUAUAAUAGCGGuaaacuucaaagaccACUUUUCUAUCCCUGGUACUGGU
.....(((((((((.((.((.(((...........))).)).)).))))))))).......

Structure
--UGCAC         U  U  C   aaac 
       CCAGGGAUA AA AG GGu    u
       ||||||||| || || |||    u
       GGUCCCUAU UU UC cca    c
UGGUCAU         C  U  A   gaaa 


Annotation confidence Not enough data
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Genome context
chrX: 13978268-13978328 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from mdo-mir-1544c-5
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1544c-5p

Accession MIMAT0028746
Description Monodelphis domestica mdo-miR-1544c-5p mature miRNA
Sequence 1 - UGCACCCAGGGAUAUAAUAGCGG - 23
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mdo-miR-1544c-3p

Accession MIMAT0028747
Description Monodelphis domestica mdo-miR-1544c-3p mature miRNA
Sequence 39 - ACUUUUCUAUCCCUGGUACUGGU - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45