miRBase entry: mdo-mir-20b

Stem-loop mdo-mir-20b


Accession
MI0023938
Description
Monodelphis domestica mdo-mir-20b precursor miRNA
Gene family
MIPF0000001; mir-17


Sequence

1969 reads, 52 reads per million, 5 experiments
CAAAGUGCUCAUAGUGCAGGUAGuuuuuugcaaaugacuACUGUACUAUGGGCACUUCAGC
..(((((((((((((((((.(((((..........))))))))))))))))))))))....

Structure
--CA                 G     uuuu 
    AAGUGCUCAUAGUGCAG UAGuu    g
    ||||||||||||||||| |||||     
    UUCACGGGUAUCAUGUC Aucag    c
CGAC                 -     uaaa 


Annotation confidence Not enough data
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Genome context
chrX: 35202543-35202603 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from mdo-mir-20b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-20b-5p

Accession MIMAT0028764
Description Monodelphis domestica mdo-miR-20b-5p mature miRNA
Sequence 1 - CAAAGUGCUCAUAGUGCAGGUAG - 23
Evidence experimental
Illumina [1]

Mature mdo-miR-20b-3p

Accession MIMAT0028765
Description Monodelphis domestica mdo-miR-20b-3p mature miRNA
Sequence 40 - ACUGUACUAUGGGCACUUCAGC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45