Stem-loop ghr-MIR7488

Accession

MI0024172

Description

Gossypium hirsutum ghr-MIR7488 precursor miRNA

Sequence

ucagauuguauuuugcuucuuuuauucaaaaaaagggggcaauuagucuuuguauguuagaccaaagagcaaacuagucauuuuuguuaaaaauuccaucaauuuauacaguuaaaaaauaugacgugccaugucuauagggaccgauuuuuuaauaguagaaauauaugagauuuuuaacaaaaaggauccauuugcuuuuugauuuaauguacaaggauuaauuugcucacuUUUUGAGUACAGGGGACAAAAuacaaucuaa
..((((((((((((((((((..((((((((((....(((((((((((((((((((((((((.(((((((((((...(((.(((((((((((((((.(((..((((.(((.((((((((((.....((.((.........)).))..)))))))))).))).))))..))).))))))))))))))).)))...))))))))))).))))))))))))))))))).))))))..)))))))))).))))).)))))))))))))..

Structure

uc             -     uu          aagg      -                   c           cua   a               c   ca    a   a          augac  g  aug 
  agauuguauuuug cuucu  uauucaaaaa    gggcaa uuagucuuuguauguuaga caaagagcaaa   guc uuuuuguuaaaaauu cau  auuu uac guuaaaaaau     gu cc   u
  ||||||||||||| |||||  ||||||||||    |||||| ||||||||||||||||||| |||||||||||   ||| ||||||||||||||| |||  |||| ||| ||||||||||     || ||   c
  ucuaacauAAAAC GGGGA  AUGAGUUUUu    cucguu aauuaggaacauguaauuu guuuuucguuu   uag aaaaacaauuuuuag gua  uaaa aug uaauuuuuua     ca gg   u
aa             A     -C          --ca      u                   a           acc   g               a   ua    g   a          ---gc  g  aua 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR7488

• Accession: MIMAT0029130
• Description: Gossypium hirsutum ghr-miR7488 mature miRNA
• Sequence: 235 - UUUUGAGUACAGGGGACAAAA - 255
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900