miRBase entry: ghr-MIR160

Stem-loop ghr-MIR160


Accession
MI0024179
Description
Gossypium hirsutum ghr-MIR160 precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
17 open access papers mention ghr-MIR160
(62 sentences)

Sequence

cauccauguauguaugugccuggcucccuguaugccauuugcagagcccauugaacuucgauagccuccgugaauggcgUAUGAGGAGCCAUGCAUGUAUucuauguauu
....((((...((((((((.(((((((.((((((((((((((.(((.(.(((((...))))).).))).)))))))))))))).))))))).))))))))..))))....

Structure
cauc    uau        c       c              a   c c     a 
    caug   guaugugc uggcucc uguaugccauuugc gag c auuga  
    ||||   |||||||| ||||||| |||||||||||||| ||| | ||||| c
    guau   UAUGUACG ACCGAGG GUAUgcgguaagug cuc g uagcu  
uuau    -cu        U       A              c   c a     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ghr-miR160

Accession MIMAT0029137
Description Gossypium hirsutum ghr-miR160 mature miRNA
Sequence 80 - UAUGAGGAGCCAUGCAUGUAU - 100
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22138860
    A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
    "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
    "Mol Plant (2012) 5:889-900