Stem-loop ghr-MIR7493

Accession

MI0024180

Description

Gossypium hirsutum ghr-MIR7493 precursor miRNA

Gene family

MIPF0001865; MIR7493

Sequence

uuauaugauuAAUAUUUUAAUAAUUCAAUCGUCAgauuuuuaaauauauuuguacuugucauacaaauaaaauuuugaaucagucuaaauuuuuauuauaucgaucuaaaauauuguuuacauuaauauauauuuaacuguuaaaauuucuuuaacauaaaauauuuaauucaugucaaacuugacgugcauaaucuacaaaaauggaccauaaaauaugaugguuggauuguuaaaauauuaauuauacaa
...(((((((((((((((((((((((((((((((.(((((......((((((((.......))))))))(((((((((..((((.(((((...(((((.........................)))))...))))))))))))))))))......................(((((((....))))))).....((((......))))....))))).)))))))))))))))))))))))))))))))...

Structure

uua                               g     ----------------------------------uaaauauauuuguacuugucauacaaaua         au    c     uuu     uaucgaucuaa 
   uaugauuAAUAUUUUAAUAAUUCAAUCGUCA auuuu                                                               aaauuuuga  cagu uaaau   uauua           a
   ||||||||||||||||||||||||||||||| |||||                                                               |||||||||  |||| |||||   |||||           a
   auauuaauuauaaaauuguuagguugguagu uaaaa                                                               uuuaaaauu  guca auuua   auaau           u
aac                               a     uaccagguaaaaacaucuaauacgugcaguucaaacuguacuuaauuuauaaaauacaauuuc         --    -     uau     uacauuuguua 

Annotation confidence Not enough data

Genome context

Unknown

Mature ghr-miR7493

• Accession: MIMAT0029138
• Description: Gossypium hirsutum ghr-miR7493 mature miRNA
• Sequence: 11 - AAUAUUUUAAUAAUUCAAUCGUCA - 34
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22138860
   A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules
   "Wang ZM, Xue W, Dong CJ, Jin LG, Bian SM, Wang C, Wu XY, Liu JY"
   "Mol Plant (2012) 5:889-900