miRBase entry: mes-MIR156k

Stem-loop mes-MIR156k


Accession
MI0024217
Description
Manihot esculenta mes-MIR156k precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
6 open access papers mention mes-MIR156k
(25 sentences)

Sequence

ugUUGACAGAAGAGAGAGAGCACaacccgccauuggcugaagagagucuuuacuuuuguugggagugugcucucccgucuucugucauca
((.(((((((((((.(((((((((.((((.((..((.((((((...))))))))..)).))))..))))))))).).)))))))))).))

Structure
  U          - A         -a    c  uu  c      g 
ug UGACAGAAGA G GAGAGCACa  cccg ca  gg ugaaga  
|| |||||||||| | |||||||||  |||| ||  || |||||| a
ac acugucuucu c cucucgugu  gggu gu  uc auuucu  
  u          g c         ga    u  uu  -      g 


Annotation confidence Not enough data
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Genome context
scaffold02421: 988565-988654 [+]

Database links

Mature mes-miR156k

Accession MIMAT0029175
Description Manihot esculenta mes-miR156k mature miRNA
Sequence 3 - UUGACAGAAGAGAGAGAGCAC - 23
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269

  2. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85