miRBase entry: mes-MIR159d

Stem-loop mes-MIR159d


Accession
MI0024220
Description
Manihot esculenta mes-MIR159d precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
6 open access papers mention mes-MIR159d
(19 sentences)

Sequence

uaauggagaucucuucacuccuauguaaaggaggcaaugguaggccauggcugcuaguucaugaauaccccugggugcgcacugugcaggauaagcagauaucgauugaucaugauuauuaugggauuggcuugggugcgcaggcuaaggguuugcaugaccugggagacgugguugccuuggcauuuuuuauAUUGGAGUGAAGGGAGCUCUGuug
((((((((.((((((((((((.(((((((((((.(((.(((((.(((((.((.((((.(((((...((((.(((.((((((((........(((((......(((((..((((((...))))))))))))))))))))))))..))).))))...))))).)))).)).))))))))))))).).)))))))))).)))))))))))).))))))))

Structure
        a            u          - g   u     g     g  g    u     aau    c   -g        gugcagga     agauau     ga      u 
uaauggag ucucuucacucc auguaaagga g caa gguag ccaug cu cuag ucaug   accc ugg  ugcgcacu        uaagc      cgauu  ucauga  
|||||||| |||||||||||| |||||||||| | ||| ||||| ||||| || |||| |||||   |||| |||  ||||||||        |||||      |||||  |||||| u
guuGUCUC AGGGAAGUGAGG UAuauuuuuu c guu ccguu ggugc ga gguc aguac   uggg auc  acgcgugg        guucg      guuag  gguauu  
        G            U          a g   -     -     a  g    c     guu    a   gg        --------     ------     --      a 


Annotation confidence Not enough data
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Genome context
scaffold02658: 496637-496853 [-]

Database links

Mature mes-miR159d

Accession MIMAT0029178
Description Manihot esculenta mes-miR159d mature miRNA
Sequence 194 - AUUGGAGUGAAGGGAGCUCUG - 214
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269