miRBase entry: mes-MIR160e

Stem-loop mes-MIR160e


Accession
MI0024225
Description
Manihot esculenta mes-MIR160e precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
7 open access papers mention mes-MIR160e
(20 sentences)

Sequence

gccUGCCUGGCUCCCUGAAUGCCAUCuaagaagcuugucaaagaauguuggcagccuucuuacuuggcaugaagggagucaagcaggc
((((((.(((((((((..((((((..(((((((.(((((((......))))))).)))))))..))))))..))))))))).))))))

Structure
      C         GA      UC       c       ag 
gccUGC UGGCUCCCU  AUGCCA  uaagaag uugucaa  a
|||||| |||||||||  ||||||  ||||||| |||||||   
cggacg acugaggga  uacggu  auucuuc gacgguu  a
      a         ag      uc       c       gu 


Annotation confidence Not enough data
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Genome context
scaffold04163: 47842-47929 [-]

Database links

Mature mes-miR160e

Accession MIMAT0029183
Description Manihot esculenta mes-miR160e mature miRNA
Sequence 4 - UGCCUGGCUCCCUGAAUGCCAUC - 26
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269