miRBase entry: mes-MIR167c

Stem-loop mes-MIR167c


Accession
MI0024245
Description
Manihot esculenta mes-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
5 open access papers mention mes-MIR167c
(20 sentences)

Sequence

gggaaaaggUGAAGCUGCCAGCAUGAUCUAgcuuugguuagagggaaagagaaggguugauuuuacuaacccuaacuaggucaugcucugacagccucacucuuuccu
((((((.(((((.(((((.((((((((((((....((((((.((((..((......))..)))).))))))....))))))))))))..).)))).))))).))))))

Structure
      a     A    - -C            cuuu      a    aa  ga 
gggaaa ggUGA GCUG C  AGCAUGAUCUAg    gguuag ggga  ga  a
|||||| ||||| |||| |  ||||||||||||    |||||| ||||  ||   
uccuuu ucacu cgac g  ucguacuggauc    ccaauc uuuu  uu  g
      c     c    a uc            aauc      a    ag  gg 


Annotation confidence Not enough data
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Genome context
scaffold11998: 669702-669809 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR167c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR167c

Accession MIMAT0029203
Description Manihot esculenta mes-miR167c mature miRNA
Sequence 10 - UGAAGCUGCCAGCAUGAUCUA - 30
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269