miRBase entry: mes-MIR167e

Stem-loop mes-MIR167e


Accession
MI0024247
Description
Manihot esculenta mes-MIR167e precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
5 open access papers mention mes-MIR167e
(20 sentences)

Sequence

ucguguaccacuaguaguUGAAGCUGCCAGCAUGAUCUGAgcuuuccuugacuaucuuauauugaauuaucgauccggaggagagacuagaucaugugguugcuucaccuauugcugguagcauga
((((((((((.((((((.((((((.((((.(((((((((..((((((((....(((..(((......))).)))...))))))))..))))))))))))).)))))).)))))).)))).))))))

Structure
      -    c      u      U    G         Ag        gacu   uu   uu 
ucgugu acca uaguag UGAAGC GCCA CAUGAUCUG  cuuuccuu    auc  aua  g
|||||| |||| |||||| |||||| |||| |||||||||  ||||||||    |||  |||   
aguacg uggu guuauc acuucg uggu guacuagau  gagaggag    uag  uau  a
      a    c      c      u    -         ca        -gcc   -c   ua 


Annotation confidence Not enough data
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Genome context
scaffold03802: 653294-653419 [-]

Database links

Mature mes-miR167e

Accession MIMAT0029205
Description Manihot esculenta mes-miR167e mature miRNA
Sequence 19 - UGAAGCUGCCAGCAUGAUCUGA - 40
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269