miRBase entry: mes-MIR169o

Stem-loop mes-MIR169o


Accession
MI0024265
Description
Manihot esculenta mes-MIR169o precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
10 open access papers mention mes-MIR169o
(28 sentences)

Sequence

guuuggUAGCCAAGGAUGACUUGCCUGcagcuucacgcagauuuuucaucuuugcaugaaauaacgcggcuaacuaagguuuugaauauguaugugguuuacaggcauucuccuuggcuaacgagac
((((.(((((((((((.((..((((((.((((.((.(((.((((...((((((((..........))).......)))))...)))).))).)).))))..)))))).))))))))))).)).))))

Structure
    g  -         U  CU      -c    u  c   g    uuc     -------   auga 
guuu gU AGCCAAGGA GA  UGCCUG  agcu ca gca auuu   aucuu       ugc    a
|||| || ||||||||| ||  ||||||  |||| || ||| ||||   |||||       |||     
caga ca ucgguuccu cu  acggac  uugg gu ugu uaag   uggaa       gcg    a
    g  a         -  -u      au    u  a   a    uuu     ucaaucg   caau 


Annotation confidence Not enough data
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Genome context
scaffold08757: 173499-173625 [-]

Database links

Mature mes-miR169o

Accession MIMAT0029223
Description Manihot esculenta mes-miR169o mature miRNA
Sequence 7 - UAGCCAAGGAUGACUUGCCUG - 27
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269