Stem-loop mes-MIR169v

Accession

MI0024272

Description

Manihot esculenta mes-MIR169v precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

10 open access papers mention mes-MIR169v
(28 sentences)

Sequence

ggUAGCCAAGGAUGACUUGCCCGauccauauucugagagguuucauggguauauuauuuauauaugcaugacgcucuuguggcuacgggcagucuccuuggcuauc
((((((((((((.((((.((((((.((((.....(((((...(((((.((((((.....)))))).)))))..))))))))).).)))))))))))))))))))))

Structure

            U    U     - u    auucu     guu     g      u 
ggUAGCCAAGGA GACU GCCCG a ccau     gagag   ucaug guauau a
|||||||||||| |||| ||||| | ||||     |||||   ||||| |||||| u
cuaucgguuccu cuga cgggc u ggug     uucuc   aguac uauaua u
            -    -     a c    -----     -gc     g      u 

Annotation confidence Not enough data

Genome context

scaffold05005: 24359-24464 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from mes-MIR169v

Mature mes-miR169v

• Accession: MIMAT0029230
• Description: Manihot esculenta mes-miR169v mature miRNA
• Sequence: 3 - UAGCCAAGGAUGACUUGCCCG - 23
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269