miRBase entry: mes-MIR169w

Stem-loop mes-MIR169w


Accession
MI0024273
Description
Manihot esculenta mes-MIR169w precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
10 open access papers mention mes-MIR169w
(28 sentences)

Sequence

UAGCCAAGGAUGACUUGCCUGauuuccuagcauuuuggguuguggcuugcaacaaucuuuauacaaauguaacccuugaugcagguucucaggcagucuccuuggcuaa
((((((((((.((((.((((((...(((.(((((..((((((....(((..............)))...))))))..))))))))...)))))))))))))))))))).

Structure
-          U    U      uuu   a     uu      uggc   caacaa 
 UAGCCAAGGA GACU GCCUGa   ccu gcauu  ggguug    uug      u
 |||||||||| |||| ||||||   ||| |||||  ||||||    |||       
 aucgguuccu cuga cggacu   gga cguag  cccaau    aac      c
a          -    -      cuu   -     uu      -gua   auauuu 


Annotation confidence Not enough data
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Genome context
scaffold05005: 23286-23394 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from mes-MIR169w
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR169w

Accession MIMAT0029231
Description Manihot esculenta mes-miR169w mature miRNA
Sequence 1 - UAGCCAAGGAUGACUUGCCUG - 21
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269