miRBase entry: mes-MIR171c

Stem-loop mes-MIR171c


Accession
MI0024281
Description
Manihot esculenta mes-MIR171c precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
7 open access papers mention mes-MIR171c
(17 sentences)

Sequence

acgagauauuggugcgguucaaucagagagcagugcucuaugaauagagcuuuguuguuugaUUGAGCCGUGCCAAUAUCACGu
(((.(((((((((((((((((((((((.(((((.((((((....)))))).))))).))))))))))))))))))))))).)))

Structure
   a                       g     u      u 
acg gauauuggugcgguucaaucaga agcag gcucua g
||| ||||||||||||||||||||||| ||||| ||||||  
uGC CUAUAACCGUGCCGAGUUaguuu uuguu cgagau a
   A                       g     u      a 


Annotation confidence Not enough data
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Genome context
scaffold02717: 36349-36432 [-]

Database links

Mature mes-miR171c

Accession MIMAT0029239
Description Manihot esculenta mes-miR171c mature miRNA
Sequence 63 - UUGAGCCGUGCCAAUAUCACG - 83
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269