miRBase entry: mes-MIR171d

Stem-loop mes-MIR171d


Accession
MI0024282
Description
Manihot esculenta mes-MIR171d precursor miRNA
Gene family
MIPF0000104; MIR171_2

Literature search
8 open access papers mention mes-MIR171d
(26 sentences)

Sequence

gugauauugguucggcucgucgucuucuucuucauuuuaucaagaaauggauccuggcuaguuauggaagauccaguagaagAUGAGCCGUGCCAAUAUCACG
(((((((((((.(((((((((.(((..(((((.........))))).((((((....(((....)))..))))))..))).))))))))).))))))))))).

Structure
-           u         g   ucuucuucauuuuaucaagaaa      cugg   g 
 gugauauuggu cggcucguc ucu                      uggauc    cua u
 ||||||||||| ||||||||| |||                      ||||||    |||  
 CACUAUAACCG GCCGAGUAg aga                      accuag    ggu u
G           U         a   --------------------ug      --aa   a 


Annotation confidence Not enough data
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Genome context
scaffold07330: 183574-183676 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mes-MIR171d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR171d

Accession MIMAT0029240
Description Manihot esculenta mes-miR171d mature miRNA
Sequence 83 - AUGAGCCGUGCCAAUAUCACG - 103
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269