miRBase entry: mes-MIR171j

Stem-loop mes-MIR171j


Accession
MI0024288
Description
Manihot esculenta mes-MIR171j precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
7 open access papers mention mes-MIR171j
(16 sentences)

Sequence

gugaaauagcgauugugauauuggccugguucacucagacguggaaaaccuacccuuuucucggcuuuauuuugcuuggacgauguugucuugcucUGAUUGAGCCGUGCCAAUAUCucagugcucuuucau
((((((.(((.((((.(((((((((.(((((((.(((((((.(((((........))))).))..........((..(((((....))))).))))))).))))))).))))))))).))))))).))))))

Structure
      u   g    u         c       c     -------------------------------  u     acc 
gugaaa agc auug gauauuggc ugguuca ucaga                               cg ggaaa   u
|||||| ||| |||| ||||||||| ||||||| |||||                               || |||||    
uacuuu ucg ugac CUAUAACCG GCCGAGU AGUcu                               gc cuuuu   a
      c   -    u         U       U     cguucuguuguagcagguucguuuuauuucg  u     ccc 


Annotation confidence Not enough data
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Genome context
scaffold06512: 1322382-1322513 [+]

Database links

Mature mes-miR171j

Accession MIMAT0029246
Description Manihot esculenta mes-miR171j mature miRNA
Sequence 97 - UGAUUGAGCCGUGCCAAUAUC - 117
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269