miRBase entry: mes-MIR171k

Stem-loop mes-MIR171k


Accession
MI0024289
Description
Manihot esculenta mes-MIR171k precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
7 open access papers mention mes-MIR171k
(16 sentences)

Sequence

aagagagauguuggaauggcucaaucaaaucaaaucucucaaggguucuuggguccuuuaaucUGAUUGAGCCGUGCCAAUAUCccucuu
(((((.((((((((.((((((((((((.((.(((...((((((....))))))...))).)).)))))))))))).)))))))).)))))

Structure
     a        a            a  c   ucu      g 
aagag gauguugg auggcucaauca au aaa   cucaag g
||||| |||||||| |||||||||||| || |||   ||||||  
uucuc CUAUAACC UGCCGAGUUAGU ua uuu   ggguuc u
     c        G            c  a   ccu      u 


Annotation confidence Not enough data
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Genome context
scaffold01701: 155454-155543 [+]

Database links

Mature mes-miR171k

Accession MIMAT0029247
Description Manihot esculenta mes-miR171k mature miRNA
Sequence 64 - UGAUUGAGCCGUGCCAAUAUC - 84
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269