Stem-loop mes-MIR172b

Accession

MI0024290

Description

Manihot esculenta mes-MIR172b precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

4 open access papers mention mes-MIR172b
(8 sentences)

Sequence

gcuggugcagcaucaccaagauucacauuugcaaaugcagagaaugagcuagcuagcuucacuuucugcccgacuccuucauguauugagagugAGAAUCUUGAUGAUGCUGCAUcggc
(((((((((((((((.((((((((.(((((.(((..(((((((.((((((....))).))).)))))))...((........)).))).))))).)))))))).)))))))))))))))

Structure

               c        a     g   --------------au       a   -   a 
gcuggugcagcauca caagauuc cauuu caa                gcagaga uga gcu g
||||||||||||||| |||||||| ||||| |||                ||||||| ||| |||  
cggcUACGUCGUAGU GUUCUAAG gugag guu                cgucuuu acu cga c
               A        A     a   auguacuuccucagcc       c   u   u 

Annotation confidence Not enough data

Genome context

scaffold05815: 307843-307961 [+]

Mature mes-miR172b

• Accession: MIMAT0029248
• Description: Manihot esculenta mes-miR172b mature miRNA
• Sequence: 95 - AGAAUCUUGAUGAUGCUGCAU - 115
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269