Stem-loop mes-MIR172c

Accession

MI0024291

Description

Manihot esculenta mes-MIR172c precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

4 open access papers mention mes-MIR172c
(8 sentences)

Sequence

agucguuuauugccgaugcagcaucaucaagauucucacuucaaauaacuuugguucauggggaugaagagagaaagagagagaggaucaccaccgugcauuugcaugUGAAUCUUGAUGAUGCUACGCccgcaaacaacgacu
(((((((..((((.(.((.((((((((((((((((((((((((...(((....)))..))))).))).................((....))..(((((....))))).)))))))))))))))).)).).))))..)))))))

Structure

       ua    c a  c                ------------------------------------------   -     aau   u 
agucguu  uugc g ug agcaucaucaagauuc                                          uca cuuca   aac u
|||||||  |||| | || ||||||||||||||||                                          ||| |||||   |||  
ucagcaa  aacg c GC UCGUAGUAGUUCUAAG                                          agu ggggu   uug u
       ca    c C  A                Uguacguuuacgugccaccacuaggagagagagaaagagaga   a     -ac   g 

Annotation confidence Not enough data

Genome context

scaffold04182: 269279-269422 [+]

Mature mes-miR172c

• Accession: MIMAT0029249
• Description: Manihot esculenta mes-miR172c mature miRNA
• Sequence: 109 - UGAAUCUUGAUGAUGCUACGC - 129
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269