miRBase entry: mes-MIR319a

Stem-loop mes-MIR319a


Accession
MI0024295
Description
Manihot esculenta mes-MIR319a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
6 open access papers mention mes-MIR319a
(25 sentences)

Sequence

cuggagcuccuuuucgaguccaauauggagggcugaucgcggcaagagcugccaucucaugcacuaaggcaagacuucacauaugagaaaggaaaaugugaaguuuggccaagugcauggugugggagcaacuccuuccgggcucucgcccaccuaUUGGACUGAAGGGAGCUCCCU
..((((((((((((..(((((((((.((.((((.((.(.(((.(((.(((.((((.(((((((((..(((.(((((((((((.............))))))))))).))).))))))))).)))).))).....)))))).).))..)))).)))))))))))))))))))))))..

Structure
cu            cg         u  a    -u  u g   c   ----a   g    c         aa   a           augag 
  ggagcuccuuuu  aguccaaua gg gggc  ga c cgg aag     gcu ccau ucaugcacu  ggc agacuucacau     a
  ||||||||||||  ||||||||| || ||||  || | ||| |||     ||| |||| |||||||||  ||| |||||||||||     a
  CCUCGAGGGAAG  UCAGGUUau cc cccg  cu g gcc uuc     cga ggug gguacguga  ccg uuugaagugua     a
UC            --         -  a    cu  c g   -   cucaa   g    u         -a   g           aaagg 


Annotation confidence Not enough data
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Genome context
scaffold10493: 48255-48431 [-]

Database links

Mature mes-miR319a

Accession MIMAT0029253
Description Manihot esculenta mes-miR319a mature miRNA
Sequence 157 - UUGGACUGAAGGGAGCUCCCU - 177
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269