Stem-loop mes-MIR319b

Accession

MI0024296

Description

Manihot esculenta mes-MIR319b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

6 open access papers mention mes-MIR319b
(22 sentences)

Sequence

agagagcuuucuucaguccacucauggguggcaauaagauuuaauuagcugccgacucauucauccaaauacugaguuaaagggcuagcugaggagguuacccaguaaaugagugaaugaagcgggagacaaauugaaucuuaagcuuccuguacUUGGACUGAAGGGAGCUCCCU
((.(((((((((((((((((...(((((.(((..((((((((((((.(((.(((..((((((((.((..((((........(((.(((((.....))))))))))))..)).))))))))..))).)).).)))))))))))).))).)))))...))))))))))))))))).))

Structure

  a                 cuc     u   aa            a -  g   ac        c  aa    gaguuaaa   c     g 
ag gagcuuucuucagucca   auggg ggc  uaagauuuaauu g cu ccg  ucauucau ca  uacu        ggg uagcu a
|| |||||||||||||||||   ||||| |||  |||||||||||| | || |||  |||||||| ||  ||||        ||| ||||| g
UC CUCGAGGGAAGUCAGGU   ugucc ucg  auucuaaguuaa c ga ggc  aguaagug gu  auga        ccc auugg g
  C                 Uca     u   -a            a a  g   ga        a  aa    --------   -     a 

Annotation confidence Not enough data

Genome context

scaffold10122: 61588-61763 [+]

Mature mes-miR319b

• Accession: MIMAT0029254
• Description: Manihot esculenta mes-miR319b mature miRNA
• Sequence: 156 - UUGGACUGAAGGGAGCUCCCU - 176
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269