miRBase entry: mes-MIR319f

Stem-loop mes-MIR319f


Accession
MI0024300
Description
Manihot esculenta mes-MIR319f precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
7 open access papers mention mes-MIR319f
(24 sentences)

Sequence

ugggagcuccuuucaguccaauacggagggcugaucgcagcaagagcugccaucucaugcaccauggcaauacuugacauuaaagaaauguuaaaauguuaaguuuggccaagugcauggugugggagcaacuccuucugugcuucgcucacccAUUGGACUGAAGGGAGCUCCuu
.(((((((((((((((((((((..((.((((.((.(((((.(((.(((.((((.((((((((..((((...((((((((((.............))))))))))...)))).)))))))).)))).))).....)))))))).)).)))).)).))))))))))))))))))))).

Structure
u                     ac  a    u  u     c   ----a   g    c        ca    aau          aaaga 
 gggagcuccuuucaguccaau  gg gggc ga cgcag aag     gcu ccau ucaugcac  uggc   acuugacauu     a
 |||||||||||||||||||||  || |||| || ||||| |||     ||| |||| ||||||||  ||||   ||||||||||     a
 uCCUCGAGGGAAGUCAGGUUA  cc cucg uu guguc uuc     cga ggug gguacgug  accg   ugaauuguaa     u
u                     -c  a    c  c     -   cucaa   g    u        -a    guu          aauug 


Annotation confidence Not enough data
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Genome context
scaffold06446: 168758-168933 [-]

Database links

Mature mes-miR319f

Accession MIMAT0029258
Description Manihot esculenta mes-miR319f mature miRNA
Sequence 155 - AUUGGACUGAAGGGAGCUCC - 174
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269

  2. PubMed ID: 26822616
    High-resolution identification and abundance profiling of cassava (Manihot esculenta Crantz) microRNAs
    Khatabi B, Arikit S, Xia R, Winter S, Oumar D, Mongomake K, Meyers BC, Fondong VN
    BMC Genomics (2016) 17:85