Stem-loop mes-MIR390

Accession

MI0024303

Description

Manihot esculenta mes-MIR390 precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

4 open access papers mention mes-MIR390
(38 sentences)

Sequence

aguauggaagaaucuguuaagcucaggagggauagcgccauggaugauuuaauauaagcccucuuuuucuucauggguuuucuucuaugaucucucuauagCGCUAUCCAUCCUGAGUUUCaucgguucuucuugcu
((((.(((((((((.((.((((((((((.(((((((((.(((((.((((......((((((.............))))))........))))..))))).))))))))).)))))))))).)).)))))))))))))

Structure

    u         u  u          g         c     -u    --uaauau      ucuuu 
agua ggaagaauc gu aagcucagga ggauagcgc augga  gauu        aagccc     u
|||| ||||||||| || |||||||||| ||||||||| |||||  ||||        ||||||     u
ucgu ucuucuugg ua UUUGAGUCCU CCUAUCGCg uaucu  cuag        uuuggg     c
    -         c  C          A         a     cu    uaucuucu      uacuu 

Annotation confidence Not enough data

Genome context

scaffold05375: 104124-104260 [-]

Mature mes-miR390

• Accession: MIMAT0029261
• Description: Manihot esculenta mes-miR390 mature miRNA
• Sequence: 102 - CGCUAUCCAUCCUGAGUUUC - 121
• Evidence: not_experimental

References

1. PubMed ID: 22388699
   Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
   "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
   "Mol Biotechnol (2013) 53:257-269