miRBase entry: mes-MIR396b

Stem-loop mes-MIR396b


Accession
MI0024316
Description
Manihot esculenta mes-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
3 open access papers mention mes-MIR396b
(13 sentences)

Sequence

gauccucuuuguauucUUCCACAGCUUUCUUGAACUGcaucuacuaugaacuugaugauuguugcauggcggauucuuguuuuuguuuuguugcgguucaauaaagcugugggaagauacugauaggguc
((((((.((.(((((.((((((((((((.(((((((((((((.((((((((.........))).))))).)))..................)))))))))).)))))))))))).))))).)).))))))

Structure
      c  u     c            C          ------------------   a     -   uug 
gauccu uu guauu UUCCACAGCUUU UUGAACUGca                  ucu cuaug aac   a
|||||| || ||||| |||||||||||| ||||||||||                  ||| ||||| |||   u
cuggga ag cauag agggugucgaaa aacuuggcgu                  agg gguac uug   g
      u  u     a            u          uguuuuguuuuuguucuu   c     g   uua 


Annotation confidence Not enough data
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Genome context
scaffold05297: 2437-2566 [+]

Database links

Mature mes-miR396b

Accession MIMAT0029274
Description Manihot esculenta mes-miR396b mature miRNA
Sequence 17 - UUCCACAGCUUUCUUGAACUG - 37
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269