miRBase entry: mes-MIR399b

Stem-loop mes-MIR399b


Accession
MI0024322
Description
Manihot esculenta mes-MIR399b precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
6 open access papers mention mes-MIR399b
(8 sentences)

Sequence

caggguaaacucuccauuggcaggcagccacuuacagaacuaauuugcauuauuuguuuuagugugcucucUGCCAAAGGAGAUUUGCCCGG
..(((((((.(((((.((((((((.(((((((.(((((..((((....)))))))))...)))).))).)))))))).))))))))))))..

Structure
ca       c     a        c   -    --u     ac    u 
  ggguaaa ucucc uuggcagg agc cacu   acaga  uaau u
  ||||||| ||||| |||||||| ||| ||||   |||||  ||||  
  CCCGUUU AGAGG AACCGUcu ucg guga   uguuu  auua g
GG       -     A        c   u    uuu     --    c 


Annotation confidence Not enough data
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Genome context
scaffold10535: 2315-2406 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mes-MIR399b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mes-miR399b

Accession MIMAT0029280
Description Manihot esculenta mes-miR399b mature miRNA
Sequence 72 - UGCCAAAGGAGAUUUGCCCGG - 92
Evidence not_experimental

References

  1. PubMed ID: 22388699
    Computational identification of microRNAs and their targets in cassava (Manihot esculenta Crantz.)
    "Patanun O, Lertpanyasampatha M, Sojikul P, Viboonjun U, Narangajavana J"
    "Mol Biotechnol (2013) 53:257-269